
At time of whelping you can get instances of one or 2 pups being more premature than the rest but provided she doesn't deliver early then they would be viable. Poor placental function/too many pups to nourish can also cause slow growth in some.
According to what we are told a bitch releases all her eggs together and 2 days later they are ripe but I wonder if some bitches vary this and release some eggs later which are then found by the longer lived sperm a couple or more days later.