
Goldmali is right - I promise you he IS still taking notice, and probably a lot more than before because he knows he can't try to warn them off as he will be corrected for it, so will need to know where they are at all times.
What you have done is create a potentially very dangerous situation - a dog that's been corrected for giving warning signals is a dog that ends up in the papers, having "attacked with no warning whatsoever".
You need a good behaviourist - one who does not spout about dominance, corrections/punishment, use choke chains, spray/shock collars, water sprays etc etc, one that uses positive reinforcement and has experience with these sort of dogs because he's going to take more work than a lot of fear aggressive dogs - because first he needs to learn that it is safe to show his feelings again. With a correction history that can be very difficult and take a lot of time - believe me, I've been there. Your behaviourist needs to be good at reading body language - his signals will likely be very subtle now so they'll need to be able to spot them as soon as they are shown.
And just to back up what Goldmali and I have said - earlier this year I worked with a JRT, a rescue with bigtime fear aggression to other dogs. He'd been being walked by a 'trainer'; her response was to correct any signs of aggression and like you, she pronounced him absolutely fine when he stopped showing them. I walked him a couple of times and he was still just as bad with me. I tried to explain this to her but no, because he didn't do it with her he was fine (actually he was seriously stressed but this 'trainer' cannot read dogs at all, if he was not reacting then he was happy to her). So I had her ask his owners - lo and behold, he was worse than ever because he couldn't communicate with other dogs in the 'trainer's' presence and was being punished for it. One day he'd seen a GSD - the breed he was most scared of - and bolted across roads etc. So I worked with them, and he is now fine - through the use of distance, patience and rewards.