
there is an article here about two puppies together:
http://www.mastamariners.com/advice_sheets_2_puppies.html and also if you search on this site you will find many posts regarding this issue and why in the majority of cases it is a very bad idea.
Also have you considered what you are going to do when the bitch comes in season? Despite what many vets will encourage it is not wise to neuter either sex until full skeletal and mental maturity, and on balance best not to neuter males at all.
This study gives the pros and cons
http://www.naiaonline.org/pdfs/LongTermHealthEffectsOfSpayNeuterInDogs.pdf Unfortunately your Vets food recommendation is based on the mark up they have on the food and that they sell ti. It is one of the better foods (doesn't agree with my lot though on it's own).
Did yo puppies have fleas or ticks, if not why did the Vet prescribe Frontline spot on? Along with others I would only use the spray version on puppies, as it is more dilute (you use more of it all over, rather than a concentrated amount in one place). My dogs have also reacted to the spot on versions, but been fine with the spray. Puppies skins are more sensitive.